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Answer: At this point, we expect that much of the physical celebration will have to be toned down due to the Torah’s mandate to protect ourselves/each other. But your question has a practical dimension and gives pause to consider what we celebrate on ST.
Your question is based on the possibility that some ST practices are due to our "making a siyum" on the Torah reading. Indeed siyumim do justify joyful actions that are otherwise forbidden, (e.g., eating on Ta’anit Bechorot, eating meat during the Nine Days).

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If only individuals, but not a whole shul, miss a parasha there would be no question for the individuals to act like everyone else. Otherwise, we would need new rules for many people, who miss due to illness, travel, etc. most years. Indeed, kri’at haTorah is a public mitzva (Ramban on the Rif, Megilla 3a) and thus relates to the community. Your question is pertinent when a majority of the shul missed parshiyot (see Mishna Berura 135:7).
The matter of finishing up also has an individual element, which you can fulfill. The halacha of shnayim mikra v’echad Targum requires you to read the parasha twice and learn it with Unkelus and/or Rashi every week (Shulchan Aruch, OC 285:1). While it is best to complete this practice each Shabbat, one can make it up until ST (ibid. 4). In that way, those who miss have a level of siyum, parallel to the communal one.
A possibly related machloket to our question is what a shul does when reopening after missing parshiyot. The Rama (OC 135:2, based on the Ohr Zarua) says that they must make up a missed parasha. The Meiri expounds that we do not say "what was, was," in order that at the year’s end they will have finished everything. On the other hand, many (including the Magen Avraham 135:4) rule like the Maharam Mintz that one makes up only one parasha at most; if more was missed, we would not be bothered that parshiyot were missed. Others require to make up as many as needed (Mishna Berura 135:6 cites both opinions). One can claim they disagree whether it is important to have read every parasha by year’s end. We can (but need not – beyond our scope) reason as follows: If your shul held by the strict opinion, they made up the missed parshiyot. If they did not find that necessary, apparently they hold that the "hole" in the Torah reading is not significant.
Clearly, the minhagim of ST, which have developed over centuries (see Hamoadim Bahalacha p. 135-141) are connected to that which WE finish the Torah. However, in the absence of sources to the contrary (which I have not found), we must presume that the fact that it is time for Klal Yisrael to finish the Torah makes it a time to celebrate. Various practices and sources indicate that the focus is on honoring the Torah (see Netzer Mata’ai 6; Pnei Aharon, OC 10) and thanking Hashem for our opportunity to learn it, not celebrating our diligence in finishing our reading. Therefore, even when communities miss multiple parshiyot, whether European Jews during World War II, Jews behind the Iron Curtain or, l’havdil, us this year, ST is still a time for heart-felt joy and special practices, in honor of the Torah and our strong connection to it.

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